PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02557.2.p
Common NameEUGRSUZ_G02557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 606aa    MW: 66962.7 Da    PI: 5.1187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02557.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-072345326
                      S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++C ff++ G+C  GdrC F Hg
  Eucgr.G02557.2.p 23 PVPCVFFQK-GICLKGDRCAFLHG 45
                      579******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-52046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3332047IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-62145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-52246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MPPAMPPAMP PVAQASYNSG KQPVPCVFFQ KGICLKGDRC AFLHGTNTVV SKVQQAPASS  60
PVNDSSTVKK PFGSLEKCSQ GQKVPPNASK LTSRPSELKP FPKVENAIPR NEVSIEKSAP  120
PSLPPPRIID EGASRYRPSS TPTVNGNLQN RTSRLHQPVV ADDYHSSHKD KEADEYLRES  180
SPGFDVLVDD ELGESDYYHN DDQFGRGRTH EGRNIGSVTD YDLDRPGDYS ADIEHEMFRD  240
PRAYDSFDRR YGWDQRQDSS DLILGGPILR DRRAYPKSDS PEHADDSDLR HRLSKHRRVN  300
GLRSVVVPDS HVADRTYRGS SRRDSQHSSS HEGQGSSRLK GRIKFPGRLN GGDVNSDRET  360
ETGRNPGRSY QGVNRLRDRL KGRAQDDYNV EARNFQGPRM RRESVDEKSI NFVGPKSLAE  420
LKGLGRGQES SPSMGKQQNC SLDQPLGDVS FEGPKPLSVL LKRKREPEGT GSGSRSSASK  480
EEHSHEVNSQ KHGDLTIHPK EEEDSYKSKS GTADAVGSNK DHTEGASSAV HGEIENEDGM  540
IVEDATEDPE LGADDQRDGD YYEQGDEGDY NYEEGENAEG DGEEEEYLDD EDGDDFAKKV  600
GVMFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392401RNFQGPRMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02557.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066967.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A059BFZ20.0A0A059BFZ2_EUCGR; Uncharacterized protein
STRINGVIT_01s0010g01770.t011e-154(Vitis vinifera)